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Phosphorylation of either Ser16 or Thr30 does not disrupt the structure of the Itch E3 ubiquitin ligase third WW domain
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Neighbor Effect on PPII Conformation in Alanine Peptides
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Disulfide Bond Mutagenesis and the Structure and Function of the Head-to-Tail Macrocyclic Trypsin Inhibitor SFTI-1,
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Water–Protein Hydrogen Exchange in the Micro-Crystalline Protein Crh as Observed by Solid State NMR Spectroscopy
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@-Tide-Stabilized β-Hairpins
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Solution Structure of the Mouse Enhancer of Rudimentary Protein Reveals a Novel Fold
NMR screening and crystal quality of bacterially expressed prokaryotic and eukaryotic proteins in a structural genomics pipeline
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Collective Oscillations and the Linear and Two-Dimensional Infrared Spectra of Inhomogeneous β-Sheets
Structural Genomics of the Severe Acute Respiratory Syndrome Coronavirus: Nuclear Magnetic Resonance Structure of the Protein nsP7
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Peptides Inducing Short-Lived Antibody Responses against Plasmodium falciparum Malaria Have Shorter Structures and Are Read in a Different MHC II Functional Register
Manuel E. Patarroyo, Martha P. Alba, Luis E. Vargas, Yolanda Silva, Jaiver Rosas and Raúl Rodríguez Biochemistry 44(18) 6745 (2005) https://doi.org/10.1021/bi050214z
Theory of long-lived nuclear spin states in solution nuclear magnetic resonance. I. Singlet states in low magnetic field
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Bayesian inference applied to macromolecular structure determination
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Structural and Functional Study of an Anemonia Elastase Inhibitor, a “Nonclassical” Kazal-Type Inhibitor from Anemonia sulcata
Letter to the Editor: Sequence specific 1HN, 13C and 15N resonance assignments of a novel calcium-binding protein from Entamoeba histolytica
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Multiple-Site Exchange in Proteins Studied with a Suite of Six NMR Relaxation Dispersion Experiments: An Application to the Folding of a Fyn SH3 Domain Mutant
Dmitry M. Korzhnev, Philipp Neudecker, Anthony Mittermaier, Vladislav Yu. Orekhov and Lewis E. Kay Journal of the American Chemical Society 127(44) 15602 (2005) https://doi.org/10.1021/ja054550e
Polypeptide Chains Containing d-γ-Hydroxyvaline
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The 2F5 Epitope Is Helical in the HIV-1 Entry Inhibitor T-20
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Solution Structure and Interaction of the Antimicrobial Polyphemusins with Lipid Membranes,
Jon-Paul S. Powers, Anmin Tan, Ayyalusamy Ramamoorthy and Robert E. W. Hancock Biochemistry 44(47) 15504 (2005) https://doi.org/10.1021/bi051302m
Measurement of Ribose Carbon Chemical Shift Tensors for A-form RNA by Liquid Crystal NMR Spectroscopy
David L. Bryce, Alexander Grishaev and Ad Bax Journal of the American Chemical Society 127(20) 7387 (2005) https://doi.org/10.1021/ja051039c
An asymmetric ion channel derived from gramicidin A
Solution structure of APETx2, a specific peptide inhibitor of ASIC3 proton‐gated channels
Benjamin Chagot, Pierre Escoubas, Sylvie Diochot, Cédric Bernard, Michel Lazdunski and Hervé Darbon Protein Science 14(8) 2003 (2005) https://doi.org/10.1110/ps.051378905
NMR structural analysis of a peptide mimic of the bridging sheet of HIV-1 gp120 in methanol and water
Kausik Chakraborty, P. Shivakumar, S. Raghothama and Raghavan Varadarajan Biochemical Journal 390(2) 573 (2005) https://doi.org/10.1042/BJ20050442
The E. coli NusA carboxy‐terminal domains are structurally similar and show specific RNAP‐ and λN interaction
Anke Eisenmann, Sabine Schwarz, Stefan Prasch, Kristian Schweimer and Paul Rösch Protein Science 14(8) 2018 (2005) https://doi.org/10.1110/ps.051372205
Solvation Properties of N-Substituted Cis and Trans Amides Are Not Identical: Significant Enthalpy and Entropy Changes Are Revealed by the Use of Variable Temperature 1H NMR in Aqueous and Chloroform Solutions and ab Initio Calculations
Anastassios N. Troganis, Emilia Sicilia, Klimentini Barbarossou, Ioannis P. Gerothanassis and Nino Russo The Journal of Physical Chemistry A 109(51) 11878 (2005) https://doi.org/10.1021/jp0537557
Solution structure of γS‐crystallin by molecular fragment replacement NMR
β‐Hairpin formation in aqueous solution and in the presence of trifluoroethanol: A 1H and 13C nuclear magnetic resonance conformational study of designed peptides
Clara M. Santiveri, David Pantoja‐Uceda, Manuel Rico and M. Angeles Jiménez Biopolymers 79(3) 150 (2005) https://doi.org/10.1002/bip.20345
G-Matrix Fourier Transform NOESY-Based Protocol for High-Quality Protein Structure Determination
Yang Shen, Hanudatta S. Atreya, Gaohua Liu and Thomas Szyperski Journal of the American Chemical Society 127(25) 9085 (2005) https://doi.org/10.1021/ja0501870
Structural determinants of protein stabilization by solutes
CBP/p300 TAZ1 Domain Forms a Structured Scaffold for Ligand Binding,
Roberto N. De Guzman, Jonathan M. Wojciak, Maria A. Martinez-Yamout, H. Jane Dyson and Peter E. Wright Biochemistry 44(2) 490 (2005) https://doi.org/10.1021/bi048161t
Folding pathway of the pyridoxal 5′-phosphate C-S lyase MalY from Escherichia coli
Mariarita Bertoldi, Barbara Cellini, Douglas V. Laurents and Carla Borri Voltattorni Biochemical Journal 389(3) 885 (2005) https://doi.org/10.1042/BJ20050279
Structure–function studies of the functional and binding epitope of the human 37 kDa laminin receptor precursor protein
Structure and properties of α-synuclein and other amyloids determined at the amino acid level
Charyl Del Mar, Eric A. Greenbaum, Leland Mayne, S. Walter Englander and Virgil L. Woods Proceedings of the National Academy of Sciences 102(43) 15477 (2005) https://doi.org/10.1073/pnas.0507405102
Biophysical and Biological Studies of End-Group-Modified Derivatives of Pep-1
K. Weller, S. Lauber, M. Lerch, A. Renaud, H. P. Merkle and O. Zerbe Biochemistry 44(48) 15799 (2005) https://doi.org/10.1021/bi051535d
NMR structures and orientation of the fourth transmembrane domain of the rat divalent metal transporter (DMT1) with G185D mutation in SDS micelles
Isolation and structural characterization of epilancin 15X, a novel lantibiotic from a clinical strain ofStaphylococcus epidermidis
Miquel B. Ekkelenkamp, Micha Hanssen, Shang-Te Danny Hsu, Ad de Jong, Dana Milatovic, Jan Verhoef and Nico A.J. van Nuland FEBS Letters 579(9) 1917 (2005) https://doi.org/10.1016/j.febslet.2005.01.083
RECOORD: A recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank
Aart J. Nederveen, Jurgen F. Doreleijers, Wim Vranken, Zachary Miller, Chris A.E.M. Spronk, Sander B. Nabuurs, Peter Güntert, Miron Livny, John L. Markley, Michael Nilges, Eldon L. Ulrich, Robert Kaptein and Alexandre M.J.J. Bonvin Proteins: Structure, Function, and Bioinformatics 59(4) 662 (2005) https://doi.org/10.1002/prot.20408
A high-throughput fluorescence polarization assay specific to the CD4 binding site of HIV-1 glycoproteins based on a fluorescein-labelled CD4 mimic
François Stricher, Loïc Martin, Philippe Barthe, Vivian Pogenberg, Alain Mechulam, André Menez, Christian Roumestand, Francisco Veas, Catherine Royer and Claudio Vita Biochemical Journal 390(1) 29 (2005) https://doi.org/10.1042/BJ20041953
Human Lactoferricin Is Partially Folded in Aqueous Solution and Is Better Stabilized in a Membrane Mimetic Solvent
Howard N. Hunter, A. Ross Demcoe, Håvard Jenssen, Tore J. Gutteberg and Hans J. Vogel Antimicrobial Agents and Chemotherapy 49(8) 3387 (2005) https://doi.org/10.1128/AAC.49.8.3387-3395.2005
Composition and Sequence-Dependent Binding of RNA to the Nucleocapsid Protein of Moloney Murine Leukemia Virus,
Anwesha Dey, Danielle York, Adjoa Smalls-Mantey and Michael F. Summers Biochemistry 44(10) 3735 (2005) https://doi.org/10.1021/bi047639q
NMR Assignment Methods for the Aromatic Ring Resonances of Phenylalanine and Tyrosine Residues in Proteins
Takuya Torizawa, Akira Mei Ono, Tsutomu Terauchi and Masatsune Kainosho Journal of the American Chemical Society 127(36) 12620 (2005) https://doi.org/10.1021/ja051386m
HEURISTIC SEARCH IN CONSTRAINED BIPARTITE MATCHING WITH APPLICATIONS TO PROTEIN NMR BACKBONE RESONANCE ASSIGNMENT
Preorganization of the Hydroxyethylene Dipeptide Isostere: The Preferred Conformation in Solution Resembles the Conformation Bound to BACE
Paloma Vidal, David Timm, Howard Broughton, Shu-Hui Chen, José A. Martín, Alfonso Rivera-Sagredo, James R. McCarthy, Michael J. Shapiro and Juan F. Espinosa Journal of Medicinal Chemistry 48(24) 7623 (2005) https://doi.org/10.1021/jm050631+
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Sérgio Oyama, Primož Pristovšek, Lorella Franzoni, Thelma A. Pertinhez, Eugenia Schininá, Christian Lücke, Heinz Rüterjans, Eliane Candiani Arantes and Alberto Spisni Protein Science 14(4) 1025 (2005) https://doi.org/10.1110/ps.041131205
Single Turn Peptide Alpha Helices with Exceptional Stability in Water
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Characterization and Structural Analyses of Nonspecific Lipid Transfer Protein 1 from Mung Bean,
Ku-Feng Lin, Yu-Nan Liu, Shang-Te D. Hsu, Dharmaraj Samuel, Chao-Sheng Cheng, Alexandre M. J. J. Bonvin and Ping-Chiang Lyu Biochemistry 44(15) 5703 (2005) https://doi.org/10.1021/bi047608v
Characteristic two-dimensional IR spectroscopic features of antiparallel and parallel β-sheet polypeptides: Simulation studies
Seungsoo Hahn, Seong-Soo Kim, Chewook Lee and Minhaeng Cho The Journal of Chemical Physics 123(8) 084905 (2005) https://doi.org/10.1063/1.1997151
Design, NMR characterization and activity of a 21-residue peptide fragment of bacteriocin AS-48 containing its putative membrane interacting region
Christy Rani R. Grace, Lukas Durrer, Steven C. Koerber, Judit Erchegyi, Jean Claude Reubi, Jean E. Rivier and Roland Riek Journal of Medicinal Chemistry 48(2) 523 (2005) https://doi.org/10.1021/jm049518u
Inelastic Neutron Scattering Studies of the Interaction between Water and Some Amino Acids
Ying Zhang, Peng Zhang, Robert C. Ford, Shenghao Han and Jichen Li The Journal of Physical Chemistry B 109(38) 17784 (2005) https://doi.org/10.1021/jp053291c
Multiple Loop Conformations of Peptides Predicted by Molecular Dynamics Simulations Are Compatible with Nuclear Magnetic Resonance
Heiko Carstens, Christian Renner, Alexander G. Milbradt, Luis Moroder and Paul Tavan Biochemistry 44(12) 4829 (2005) https://doi.org/10.1021/bi047453r
Solution Structure of Zinc- and Calcium-Bound Rat S100B as Determined by Nuclear Magnetic Resonance Spectroscopy,
Paul T. Wilder, Kristen M. Varney, Michele B. Weiss, Rossitza K. Gitti and David J. Weber Biochemistry 44(15) 5690 (2005) https://doi.org/10.1021/bi0475830
Two-Dimensional Measurement of Proton T1ρ Relaxation in Unlabeled Proteins: Mobility Changes in α-Bungarotoxin upon Binding of an Acetylcholine Receptor Peptide
NMR study of a membrane protein in detergent-free aqueous solution
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Isolation, Solution Structure, and Insecticidal Activity of Kalata B2, a Circular Protein with a Twist: Do Möbius Strips Exist in Nature?,
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Accurate Determination of Leucine and Valine Side-chain Conformations using U-[15N/13C/2H]/[1H-(methine/methyl)-Leu/Val] Isotope Labeling, NOE Pattern Recognition, and Methine Cγ–Hγ/Cβ–Hβ Residual Dipolar Couplings: Application to the 34-kDa Enzyme IIAChitobiose
Accurate measurement of 15N?13C residual dipolar couplings in nucleic acids
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Solution structure of two insect‐specific spider toxins and their pharmacological interaction with the insect voltage‐gated Na+ channel
G. Ferrat, F. Bosmans, J. Tytgat, C. Pimentel, B. Chagot, N. Gilles, T. Nakajima, H. Darbon and G. Corzo Proteins: Structure, Function, and Bioinformatics 59(2) 368 (2005) https://doi.org/10.1002/prot.20424
3D structure of Alzheimer's amyloid-β(1–42) fibrils
Thorsten Lührs, Christiane Ritter, Marc Adrian, Dominique Riek-Loher, Bernd Bohrmann, Heinz Döbeli, David Schubert and Roland Riek Proceedings of the National Academy of Sciences 102(48) 17342 (2005) https://doi.org/10.1073/pnas.0506723102
Solution NMR-derived global fold of a monomeric 82-kDa enzyme
Vitali Tugarinov, Wing-Yiu Choy, Vladislav Yu. Orekhov and Lewis E. Kay Proceedings of the National Academy of Sciences 102(3) 622 (2005) https://doi.org/10.1073/pnas.0407792102
A General Strategy for the Assignment of Aliphatic Side-Chain Resonances of Uniformly 13C,15N-Labeled Large Proteins
Yingqi Xu, Zhi Lin, Chien Ho and Daiwen Yang Journal of the American Chemical Society 127(34) 11920 (2005) https://doi.org/10.1021/ja053539b
Structural studies on 26RFa, a novel human RFamide-related peptide with orexigenic activity
Romain Thuau, Laure Guilhaudis, Isabelle Ségalas-Milazzo, Nicolas Chartrel, Hassan Oulyadi, Stéphane Boivin, Alain Fournier, Jérôme Leprince, Daniel Davoust and Hubert Vaudry Peptides 26(5) 779 (2005) https://doi.org/10.1016/j.peptides.2005.01.006
Managing the solvent water polarization to obtain improved NMR spectra of large molecular structures
Sebastian Hiller, Gerhard Wider, Touraj Etezady-Esfarjani, Reto Horst and Kurt Wüthrich Journal of Biomolecular NMR 32(1) 61 (2005) https://doi.org/10.1007/s10858-005-3070-8
Sequence-specific Assignment of <sup>1</sup>H-NMR Resonance and Determination of the Secondary Structure of Jingzhaotoxin-I
Structure−Activity Studies of Peptides from the “Hot-Spot” Region of Human CD2 Protein: Development of Peptides for Immunomodulation
Jining Liu, Jinfa Ying, Vincent T. K. Chow, Victor J. Hruby and Seetharama D. Satyanarayanajois Journal of Medicinal Chemistry 48(20) 6236 (2005) https://doi.org/10.1021/jm0503547
Glycopeptides Related to β-Endorphin Adopt Helical Amphipathic Conformations in the Presence of Lipid Bilayers
Muthu Dhanasekaran, Michael M. Palian, Isabel Alves, Larisa Yeomans, Charles M. Keyari, Peg Davis, Edward J. Bilsky, Richard D. Egleton, Henry I. Yamamura, Neil E. Jacobsen, Gordon Tollin, Victor J. Hruby, Frank Porreca and Robin Polt Journal of the American Chemical Society 127(15) 5435 (2005) https://doi.org/10.1021/ja0432158
Solution Structure of an Antifreeze Protein CfAFP-501 from Choristoneura fumiferana
Letter to the Editor: 1H, 13C and 15N assignments for the II–III loop region of the skeletal dyhydropyridine receptor
Yanfang Cui, Yamuna Karunasekara, Peta J. Harvey, Philip G. Board, Angela F. Dulhunty and Marco G. Casarotto Journal of Biomolecular NMR 32(1) 89 (2005) https://doi.org/10.1007/s10858-005-3038-8
The Micelle-Bound Structure of an Antimicrobial Peptide Derived from the α-Chain of Bovine Hemoglobin Isolated from the TickBoophilus microplus
Maurício L. Sforça, Alessandra Machado, Rita C. R. Figueredo, Sérgio Oyama, Fernanda D. Silva, Antonio Miranda, Sirlei Daffre, M. Terêsa M. Miranda, Alberto Spisni and Thelma A. Pertinhez Biochemistry 44(17) 6440 (2005) https://doi.org/10.1021/bi0475323
Suppression of Axial Methionine Fluxion in Hydrogenobacter thermophilus Gln64Asn Cytochrome c552
N-Terminal Stathmin-like Peptides Bind Tubulin and Impede Microtubule Assembly
Marie-Jeanne Clément, Isabelle Jourdain, Sylvie Lachkar, Philippe Savarin, Benoît Gigant, Marcel Knossow, Flavio Toma, André Sobel and Patrick A. Curmi Biochemistry 44(44) 14616 (2005) https://doi.org/10.1021/bi0512492
NMR data collection and analysis protocol for high-throughput protein structure determination
Gaohua Liu, Yang Shen, Hanudatta S. Atreya, David Parish, Ying Shao, Dinesh K. Sukumaran, Rong Xiao, Adelinda Yee, Alexander Lemak, Aneerban Bhattacharya, Thomas A. Acton, Cheryl H. Arrowsmith, Gaetano T. Montelione and Thomas Szyperski Proceedings of the National Academy of Sciences 102(30) 10487 (2005) https://doi.org/10.1073/pnas.0504338102
Experimental Demonstration of T:(G:G:G:G):T Hexad and T:A:A:T Tetrad Alignments within a DNA Quadruplex Stem