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Synthetic Virus‐Like Particles and Conformationally Constrained Peptidomimetics in Vaccine Design
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NMR Studies of Models Having the Pt(d(GpG)) 17-Membered Macrocyclic Ring Formed in DNA by Platinum Anticancer Drugs: Pt Complexes with Bulky Chiral Diamine Ligands
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Geometric Parameters Defining the Structure of Proteins—Relation to Early-Stage Folding Step
Evaluation of Readily Accessible Azoles as Mimics of the Aromatic Ring of D‐Phenylalanine in the Turn Region of Gramicidin S
Matthijs van der Knaap, Lianne T. Lageveen, Henk J. Busscher, Roos Mars‐Groenendijk, Daan Noort, José M. Otero, Antonio L. Llamas‐Saiz, Mark J. van Raaij, Gijsbert A. van der Marel, Herman S. Overkleeft and Mark Overhand ChemMedChem 6(5) 840 (2011) https://doi.org/10.1002/cmdc.201000539
Gramicidin A Backbone and Side Chain Dynamics Evaluated by Molecular Dynamics Simulations and Nuclear Magnetic Resonance Experiments. I: Molecular Dynamics Simulations
Helgi I. Ingólfsson, Yuhui Li, Vitaly V. Vostrikov, Hong Gu, James F. Hinton, Roger E. Koeppe, Benoît Roux and Olaf S. Andersen The Journal of Physical Chemistry B 115(22) 7417 (2011) https://doi.org/10.1021/jp200904d
Single-Stranded Oligonucleotide Adducts Formed by Pt Complexes Favoring Left-Handed Base Canting: Steric Effect of Flanking Residues and Relevance to DNA Adducts Formed by Pt Anticancer Drugs
Antarctic and Arctic populations of the ciliate
Euplotes nobilii
show common pheromone-mediated cell-cell signaling and cross-mating
Graziano Di Giuseppe, Fabrizio Erra, Fernando Dini, Claudio Alimenti, Adriana Vallesi, Bill Pedrini, Kurt Wüthrich and Pierangelo Luporini Proceedings of the National Academy of Sciences 108(8) 3181 (2011) https://doi.org/10.1073/pnas.1019432108
Two ground state isoforms and a chromophore
D
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Chen Song, Georgios Psakis, Christina Lang, Jo Mailliet, Wolfgang Gärtner, Jon Hughes and Jörg Matysik Proceedings of the National Academy of Sciences 108(10) 3842 (2011) https://doi.org/10.1073/pnas.1013377108
Stabilization of α-Conotoxin AuIB: Influences of Disulfide Connectivity and Backbone Cyclization
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Revealing the Position of the Substrate in Nickel Superoxide Dismutase: A Model Study
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Unique scorpion toxin with a putative ancestral fold provides insight into evolution of the inhibitor cystine knot motif
Jennifer J. Smith, Justine M. Hill, Michelle J. Little, Graham M. Nicholson, Glenn F. King and Paul F. Alewood Proceedings of the National Academy of Sciences 108(26) 10478 (2011) https://doi.org/10.1073/pnas.1103501108
Impact of 15N R2/R1 Relaxation Restraints on Molecular Size, Shape, and Bond Vector Orientation for NMR Protein Structure Determination with Sparse Distance Restraints
Yaroslav Ryabov, Charles D. Schwieters and G. Marius Clore Journal of the American Chemical Society 133(16) 6154 (2011) https://doi.org/10.1021/ja201020c
Structural autonomy of a β-hairpin peptide derived from the pneumococcal choline-binding protein LytA
Beatriz Maestro, Clara M. Santiveri, M. Angeles Jiménez and Jesús M. Sanz Protein Engineering, Design and Selection 24(1-2) 113 (2011) https://doi.org/10.1093/protein/gzq087
Role of Zinc in Human Islet Amyloid Polypeptide Aggregation
Jeffrey R. Brender, Kevin Hartman, Ravi Prakash Reddy Nanga, Nataliya Popovych, Roberto de la Salud Bea, Subramanian Vivekanandan, E. Neil G. Marsh and Ayyalusamy Ramamoorthy Journal of the American Chemical Society 132(26) 8973 (2010) https://doi.org/10.1021/ja1007867
Alanine Methyl Groups as NMR Probes of Molecular Structure and Dynamics in High-Molecular-Weight Proteins
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The Cold Denatured State of the C-terminal Domain of Protein L9 Is Compact and Contains Both Native and Non-native Structure
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SEQUENCE AND STRUCTURAL ANALYSIS OF κ-CARRAGEENAN-DERIVED OLIGOSACCHARIDES BY TWO-DIMENSIONAL NUCLEAR MAGNETIC RESONANCE1
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A Combinatorial NMR and EPR Approach for Evaluating the Structural Ensemble of Partially Folded Proteins
Jampani Nageswara Rao, Christine C. Jao, Balachandra G. Hegde, Ralf Langen and Tobias S. Ulmer Journal of the American Chemical Society 132(25) 8657 (2010) https://doi.org/10.1021/ja100646t
Rapid global structure determination of large RNA and RNA complexes using NMR and small-angle X-ray scattering
NMR Spectroscopic Investigation of Mobility and Hydrogen Bonding of the Chromophore in the Binding Pocket of Phytochrome Proteins
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Structure elucidation of dimeric transmembrane domains of bitopic proteins
Eduard V. Bocharov, Pavel E. Volynsky, Konstantin V. Pavlov, Roman G. Efremov and Alexander S. Arseniev Cell Adhesion & Migration 4(2) 284 (2010) https://doi.org/10.4161/cam.4.2.11930
Chemical Synthesis, Folding, and Structural Insights into O-Fucosylated Epidermal Growth Factor-like Repeat 12 of Mouse Notch-1 Receptor
Kazumi Hiruma-Shimizu, Kensaku Hosoguchi, Yan Liu, Naoki Fujitani, Takashi Ohta, Hiroshi Hinou, Takahiko Matsushita, Hiroki Shimizu, Ten Feizi and Shin-Ichiro Nishimura Journal of the American Chemical Society 132(42) 14857 (2010) https://doi.org/10.1021/ja105216u
Solution structure and dynamics of human ubiquitin conjugating enzyme Ube2g2
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Yang Mao, Xianzhong Xu, Wei Xu, Yuko Ishida, Walter S. Leal, James B. Ames and Jon Clardy Proceedings of the National Academy of Sciences 107(44) 19102 (2010) https://doi.org/10.1073/pnas.1012274107
X‐ray crystallographic and NMR studies of pantothenate synthetase provide insights into the mechanism of homotropic inhibition by pantoate
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Jessica J. Bockhorn, Kristi L. Lazar, Adam J. Gasser, Laura M. Luther, Isam M. Qahwash, Neeraj Chopra and Stephen C. Meredith Peptide Science 94(4) 511 (2010) https://doi.org/10.1002/bip.21391
Interplay of Structure and Dynamics in Macromolecular and Supramolecular Systems
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Dungeng Peng, Li-Hua Ma, Hiroshi Ogura, En-Che Yang, Xuhong Zhang, Tadashi Yoshida and Gerd N. La Mar Biochemistry 49(28) 5832 (2010) https://doi.org/10.1021/bi1000867
Synthesis, Preferred Conformation, and Membrane Activity of Medium‐Length Peptaibiotics: Tylopeptin B
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Cured of “Stickiness”, Poly-l β-Hairpin is Promoted with ll-to-dd Mutation as a Protein and a Hydrolase Mimic
Kirti Patel, Bhupesh Goyal, Anil Kumar, Nand Kishore and Susheel Durani The Journal of Physical Chemistry B 114(50) 16887 (2010) https://doi.org/10.1021/jp1062572
Interaction of Alcohols with [Val5]angiotensin in Alcohol−Water Mixtures
Reparameterization of RNA χ Torsion Parameters for the AMBER Force Field and Comparison to NMR Spectra for Cytidine and Uridine
Ilyas Yildirim, Harry A. Stern, Scott D. Kennedy, Jason D. Tubbs and Douglas H. Turner Journal of Chemical Theory and Computation 6(5) 1520 (2010) https://doi.org/10.1021/ct900604a
Solution Structure and Membrane Binding of the Toxin Fst of theparAddiction Module
Christoph Göbl, Simone Kosol, Thomas Stockner, Hanna M. Rückert and Klaus Zangger Biochemistry 49(31) 6567 (2010) https://doi.org/10.1021/bi1005128
NMR Structural and Dynamical Investigation of the Isolated Voltage-Sensing Domain of the Potassium Channel KvAP: Implications for Voltage Gating
Zakhar O. Shenkarev, Alexander S. Paramonov, Ekaterina N. Lyukmanova, Lyudmila N. Shingarova, Sergei A. Yakimov, Maxim A. Dubinnyi, Vladimir V. Chupin, Mikhail P. Kirpichnikov, Marcel J. J. Blommers and Alexander S. Arseniev Journal of the American Chemical Society 132(16) 5630 (2010) https://doi.org/10.1021/ja909752r
Structural investigations on the Nodal‐Cripto binding: A theoretical and experimental approach
CuI‐Catalyzed Azide–Alkyne Intramolecular i‐to‐(i+4) Side‐Chain‐to‐Side‐Chain Cyclization Promotes the Formation of Helix‐Like Secondary Structures
Mario Scrima, Alexandra Le Chevalier‐Isaad, Paolo Rovero, Anna Maria Papini, Michael Chorev and Anna Maria D'Ursi European Journal of Organic Chemistry 2010(3) 446 (2010) https://doi.org/10.1002/ejoc.200901157
Structural characterisation of the natively unfolded enterocin EJ97
José L. Neira, Lellys M. Contreras, Olga Ruiz de los Paños, Marina Sánchez-Hidalgo, Manuel Martínez-Bueno, Mercedes Maqueda and Manuel Rico Protein Engineering, Design and Selection 23(7) 507 (2010) https://doi.org/10.1093/protein/gzq020
Influence of Phosphocholine Alkyl Chain Length on Peptide−Micelle Interactions and Micellar Size and Shape
Christoph Göbl, Martin Dulle, Walter Hohlweg, Jörg Grossauer, S. Fabio Falsone, Otto Glatter and Klaus Zangger The Journal of Physical Chemistry B 114(13) 4717 (2010) https://doi.org/10.1021/jp9114089
β‐Sheet aggregation of kisspeptin‐10 is stimulated by heparin but inhibited by amphiphiles
Søren B. Nielsen, Magnus Franzmann, Rajiv V. Basaiawmoit, Reinhard Wimmer, Jens D. Mikkelsen and Daniel E. Otzen Biopolymers 93(8) 678 (2010) https://doi.org/10.1002/bip.21434
20ns Molecular Dynamics Simulation of the Antennapedia Homeodomain-DNA Complex: Water Interaction and DNA Structure Analysis
Crosstalk along the Stalk: Dynamics of the Interaction of Subunits B and F in the A1AO ATP Synthase of Methanosarcina mazei Gö1
Devanathan Raghunathan, Shovanlal Gayen, Gerhard Grüber and Chandra S. Verma Biochemistry 49(19) 4181 (2010) https://doi.org/10.1021/bi9021236
Inhibiting α-Synuclein Oligomerization by Stable Cell-Penetrating β-Synuclein Fragments Recovers Phenotype of Parkinson's Disease Model Flies
Ronit Shaltiel-Karyo, Moran Frenkel-Pinter, Nirit Egoz-Matia, Anat Frydman-Marom, Deborah E. Shalev, Daniel Segal, Ehud Gazit and Mark R. Cookson PLoS ONE 5(11) e13863 (2010) https://doi.org/10.1371/journal.pone.0013863
Binding of the Hemopressin Peptide to the Cannabinoid CB1 Receptor: Structural Insights
Mario Scrima, Sara Di Marino, Manuela Grimaldi, Antonia Mastrogiacomo, Ettore Novellino, Maurizio Bifulco and Anna Maria D’Ursi Biochemistry 49(49) 10449 (2010) https://doi.org/10.1021/bi1011833
Antimicrobial Peptides and Their Superior Fluorinated Analogues: Structure–Activity Relationships as Revealed by NMR Spectroscopy and MD Calculations
M. Dolores Díaz , Martina Palomino‐Schätzlein , Francisco Corzana , Cecilia Andreu, Rodrigo J. Carbajo, Marcellí del Olmo, Angeles Canales‐Mayordomo, Antonio Pineda‐Lucena, Gregorio Asensio and Jesús Jiménez‐Barbero ChemBioChem 11(17) 2424 (2010) https://doi.org/10.1002/cbic.201000424
Mechanism of formation of the C‐terminal β‐hairpin of the B3 domain of the immunoglobulin‐binding protein G from Streptococcus. IV. Implication for the mechanism of folding of the parent protein
Agnieszka Lewandowska, Stanislaw Ołdziej, Adam Liwo and Harold A. Scheraga Biopolymers 93(5) 469 (2010) https://doi.org/10.1002/bip.21365
Novel Octreotide Dicarba-analogues with High Affinity and Different Selectivity for Somatostatin Receptors
Alessandra Di Cianni, Alfonso Carotenuto, Diego Brancaccio, Ettore Novellino, Jean Claude Reubi, Karin Beetschen, Anna Maria Papini and Mauro Ginanneschi Journal of Medicinal Chemistry 53(16) 6188 (2010) https://doi.org/10.1021/jm1005868
Driving Forces for Nucleic Acid pKa Shifting in an A+·C Wobble: Effects of Helix Position, Temperature, and Ionic Strength
Complete Phenotypic Recovery of an Alzheimer's Disease Model by a Quinone-Tryptophan Hybrid Aggregation Inhibitor
Roni Scherzer-Attali, Riccardo Pellarin, Marino Convertino, Anat Frydman-Marom, Nirit Egoz-Matia, Sivan Peled, Michal Levy-Sakin, Deborah E. Shalev, Amedeo Caflisch, Ehud Gazit, Daniel Segal and Juliet Ann Gerrard PLoS ONE 5(6) e11101 (2010) https://doi.org/10.1371/journal.pone.0011101
The Basic Helix−Loop−Helix Region of Human Neurogenin 1 Is a Monomeric Natively Unfolded Protein Which Forms a “Fuzzy” Complex upon DNA Binding
David Aguado-Llera, Erik Goormaghtigh, Natalie de Geest, Xiao-Jiang Quan, Alicia Prieto, Bassen A. Hassan, Javier Gómez and José L. Neira Biochemistry 49(8) 1577 (2010) https://doi.org/10.1021/bi901616z
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Effect of the ΔPhe residue configuration on a didehydropeptides conformation: A combined CD and NMR study
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Conformational Flexibility of Y145Stop Human Prion Protein Amyloid Fibrils Probed by Solid-State Nuclear Magnetic Resonance Spectroscopy
Jonathan J. Helmus, Krystyna Surewicz, Witold K. Surewicz and Christopher P. Jaroniec Journal of the American Chemical Society 132(7) 2393 (2010) https://doi.org/10.1021/ja909827v
Rational Design of Tryptophan‐Rich Antimicrobial Peptides with Enhanced Antimicrobial Activities and Specificities
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Agnieszka Lewandowska, Stanisław Ołdziej, Adam Liwo and Harold A. Scheraga Proteins: Structure, Function, and Bioinformatics 78(3) 723 (2010) https://doi.org/10.1002/prot.22605
Solution structure of LC5, the CCR5‐ derived peptide for HIV‐1 inhibition
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Determination of an unusual secondary structural element in the immunostimulating tetrapeptide rigin in aqueous environments: insights via MD simulations, 1H NMR and CD spectroscopic studies
Specific interactions of sticholysin I with model membranes: An NMR study
Inés Castrillo, Nelson A. Araujo, Jorge Alegre‐Cebollada, José G. Gavilanes, Álvaro Martínez‐del‐Pozo and Marta Bruix Proteins: Structure, Function, and Bioinformatics 78(8) 1959 (2010) https://doi.org/10.1002/prot.22712
Mapping interactions of gastric inhibitory polypeptide with GIPR N‐terminus using NMR and molecular dynamics simulations
Human Plasminogen Kringle 3: Solution Structure, Functional Insights, Phylogenetic Landscape,
Martin T. Christen, Pascal Frank, Johann Schaller and Miguel Llinás Biochemistry 49(33) 7131 (2010) https://doi.org/10.1021/bi100687f
Antimicrobial and conformational studies of the active and inactive analogues of the protegrin‐1 peptide
Sylwia Rodziewicz‐Motowidło, Beata Mickiewicz, Katarzyna Greber, Emilia Sikorska, Łukasz Szultka, Elżbieta Kamysz and Wojciech Kamysz The FEBS Journal 277(4) 1010 (2010) https://doi.org/10.1111/j.1742-4658.2009.07544.x
Structure–activity relationship of marinostatin, a serine protease inhibitor isolated from a marine organism
A Peptide from the Beta‐strand Region of CD2 Protein that Inhibits Cell Adhesion and Suppresses Arthritis in a Mouse Model
Seetharama D. Satyanarayanajois, Barlas Büyüktimkin, Ameya Gokhale, Sharon Ronald, Teruna J. Siahaan and John R. Latendresse Chemical Biology & Drug Design 76(3) 234 (2010) https://doi.org/10.1111/j.1747-0285.2010.01001.x
Structural and Biophysical Characterization of a Cyclic Bioadhesive with Cell Attachment Ability
Rapid determination of antigenic epitopes in human NGAL using NMR
Edward T. Olejniczak, Qiaoqiao Ruan, Robert N. Ziemann, Larry G. Birkenmeyer, Sylvia C. Saldana and Sergey Y. Tetin Biopolymers 93(7) 657 (2010) https://doi.org/10.1002/bip.21417
Dueling Post-Translational Modifications Trigger Folding and Unfolding of a β-Hairpin Peptide
Alexander J. Riemen and Marcey L. Waters Journal of the American Chemical Society 132(26) 9007 (2010) https://doi.org/10.1021/ja101079z
Micelle-bound structures and dynamics of the hinge deleted analog of melittin and its diastereomer: Implications in cell selective lysis by d-amino acid containing antimicrobial peptides
PAMAM Dendrimers for siRNA Delivery: Computational and Experimental Insights
Giovanni Maria Pavan, Paola Posocco, Aaron Tagliabue, Marek Maly, Anastasia Malek, Andrea Danani, Enzio Ragg, Carlo V. Catapano and Sabrina Pricl Chemistry – A European Journal 16(26) 7781 (2010) https://doi.org/10.1002/chem.200903258
Elucidation of the Self-Assembly Pathway of Lanreotide Octapeptide into β-Sheet Nanotubes: Role of Two Stable Intermediates
Emilie Pouget, Nicolas Fay, Erik Dujardin, Nadège Jamin, Patrick Berthault, Lionel Perrin, Anjali Pandit, Thierry Rose, Céline Valéry, Daniel Thomas, Maïté Paternostre and Franck Artzner Journal of the American Chemical Society 132(12) 4230 (2010) https://doi.org/10.1021/ja9088023
Helix Formation in a Pentapeptide: Experiment and Force-field Dependent Dynamics
Structure Determination of the Top‐Loop of the Conserved 3′‐Terminal Secondary Structure in the Genome of Flaviviruses
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NMR characterisation of the minimal interacting regions of centrosomal proteins 4.1R and NuMA1: effect of phosphorylation
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Isolation, Structure Elucidation, and Synergistic Antibacterial Activity of a Novel Two-Component Lantibiotic Lichenicidin from Bacillus licheniformis VK21
Zakhar O. Shenkarev, Ekaterina I. Finkina, Elina K. Nurmukhamedova, Sergey V. Balandin, Konstantin S. Mineev, Kirill D. Nadezhdin, Zoya A. Yakimenko, Andrey A. Tagaev, Yuri V. Temirov, Alexander S. Arseniev and Tatiana V. Ovchinnikova Biochemistry 49(30) 6462 (2010) https://doi.org/10.1021/bi100871b
Side Chain Cyclization Based on Serine Residues: Synthesis, Structure, and Activity of a Novel Cyclic Analogue of the Parathyroid Hormone Fragment 1−11
Andrea Caporale, Mattia Sturlese, Lorenzo Gesiot, Fabrizio Zanta, Angela Wittelsberger and Chiara Cabrele Journal of Medicinal Chemistry 53(22) 8072 (2010) https://doi.org/10.1021/jm1008264
Structural and biochemical characteristics of the cyclotide kalata B5 from Oldenlandia affinis
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NMR Structure of Navel Orangeworm Moth Pheromone-Binding Protein (AtraPBP1): Implications for pH-Sensitive Pheromone Detection,
Xianzhong Xu, Wei Xu, Josep Rayo, Yuko Ishida, Walter S. Leal and James B. Ames Biochemistry 49(7) 1469 (2010) https://doi.org/10.1021/bi9020132
Molecular and Supramolecular Structural Studies on Significant Repetitive Sequences of Resilin
Antonio M. Tamburro, Simona Panariello, Valentina Santopietro, Angelo Bracalello, Brigida Bochicchio and Antonietta Pepe ChemBioChem 11(1) 83 (2010) https://doi.org/10.1002/cbic.200900460